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ArabidopsisArrays

Latest work with AtSNPtile1 for association mapping, and transcriptome/methylome

Study on SNP probe redundancy by Scott Smemo

Diversity Profiling by Array Hybridization

See our analysis of Single Feature Polymorphisms (SFPs), Genotyping using DNA hybridization to Affymetrix expression arrays.

We have extended the method of bulk segregant analysis to quantitative traits using array hybridization, eXtreme Array Mapping (XAM).

See a methods paper so you can SFP genotype and ChipMap for yourself.

We recommend CopyMap from Sebastian Zoellner for CNV detection

Also check out the site of Magnus Nordborg at USC, which describes a genome wide sequence survey of 96 Arabidopsis accessions.                                         

 

 

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