Evolutionary Genomics

Course in Evolutionary Genomics 2004

By Wen-Hsiung Li and Justin Borevitz

Wednesday 2:30-4:30pm Lillie Room

Intro    Li’s .ppt  Borevitz .ppt

Early Suggested papers

Assignments of Topics and Reading:

I. Evolution of Gene Expression  10/6/04

JJ, Megan Reading List

Ia. Prediction of cis elements from transcriptome profiling (Jing)

JJ finish’s up Reading List 10/13/04

Ib. ChIP chip Jake will present 10/20/04

II. Evolution of transcriptional regulatory code 10/20/04

Geoff, Reading List

NOTE skip a week

III. Evolution of regulatory and transcriptional networks 11/03/04

Geoff will finish, Elliot Reading list

IV. Protein Protein Interactions 11/10/04

Josh, Ying Reading  List

V. Genetic variation within and between species 11/17/04  (Li out of town)

David, Julie (Reading list)

NOTE skip 11/24 Thanksgiving

VI. Effects of recombination and gene conversion on GC content and substitution rate

In lieu of this class we will go to Wen-Hsiung’s seminar on 11/29/04

VII. Evolution of duplicate and new genes 12/1/04

Jun, Loic (Potential Reading list)  Seminar (12/2/04)